30-Minute Grain-Free Chocolate Chip Mini Cupcakes

Prep: 15 minCook: 15 min18 cupcakesmedium
Grain-Free Chocolate Chip Mini Cupcakes

Naturally sweetened mini cupcakes made with arrowroot and coconut flour instead of wheat, bound with eggs and palm oil for a tender crumb. Studded with semisweet chocolate chips and finished with a light vanilla flavor. Perfect for those avoiding grains or gluten, these bite-sized treats work well for lunchboxes, parties, or afternoon snacks. This version prioritizes whole-food ingredients and sustainable sourcing while skipping refined sugar and conventional flour.

Ingredients

Yield: 18 cupcakes
  • ¾ cup arrowroot flour, or arrowroot starch
    tapioca starch1:1grain-freepaleo
  • ½ cup coconut flour, or finely ground coconut
    additional arrowroot flour2:3texture changedenser
    Full guide →
  • ½ tsp sea salt, fine
  • ¼ tsp baking soda, or sodium bicarbonate
  • 6 whole eggs, large
  • ½ cup maple syrup, pure
    honey0.75:1sweetness varies
    Full guide →
  • 2 tsp vanilla extract, pure
  • ¼ cup palm oil shortening, organic, sustainably sourced
    unsalted butter1:1dairy

    adds:dairy

  • ¾ cup semisweet chocolate chips, or dark chocolate chips
    dark chocolate chips1:1intensity
    Full guide →

Instructions

  1. 1

    Preheat oven to 350F and line a mini muffin tin with cupcake papers.

  2. 2

    Whisk arrowroot flour, coconut flour, sea salt, and baking soda together in a large bowl.

  3. 3

    In a medium bowl, combine eggs, maple syrup, and vanilla extract, then blend with an electric hand mixer until frothy.

  4. 4

    Pour dry ingredients into wet ingredients and blend until smooth.

  5. 5

    Melt palm oil shortening over medium-low heat and cool slightly.

  6. 6

    Pour cooled shortening into batter and blend on medium-high speed until smooth and airy.

  7. 7

    Stir chocolate chips into batter by hand.

  8. 8

    Fill muffin cups using a cookie scoop and bake on middle rack until a toothpick inserted comes out clean, about 10-15 minutes.

  9. 9

    Cool completely before frosting.

Tips

Tip 1

Ensure palm shortening cools to warm before folding into batter; adding it too hot can cook the eggs and create a dense crumb.

Tip 2

Use a #50 disher or cookie scoop for even-sized cupcakes that bake uniformly in the 10-15 minute window.

Tip 3

These freeze beautifully unfrosted for up to 3 months; thaw at room temperature before serving.

Good to Know

Storage

Unfrosted cupcakes keep in an airtight container at room temperature for 2 days or refrigerated for up to 5 days. Frosted cupcakes best within 1-2 days.

Make Ahead

Bake cupcakes unfrosted up to 3 months ahead and freeze; thaw at room temperature before frosting.

Serve With

Serve at room temperature, plain or with frosting. Pairs with milk, coffee, or tea.

Common Mistakes

Watch

Add palm shortening while hot to avoid properly whipping air into batter, resulting in dense cupcakes.

Watch

Overmix wet and dry ingredients together to avoid tough, gummy crumb.

Watch

Overbake past toothpick-clean stage to avoid dry cupcakes; check at 10 minutes for mini size.

Substitutions

Dairy-Free Swaps

palm oil shortening
unsalted butter1:1dairy

adds:dairy

Full guide →

General Alternatives

semisweet chocolate chips
dark chocolate chips1:1intensity
Full guide →
arrowroot flour
tapioca starch1:1grain-freepaleo
Full guide →
coconut flour
additional arrowroot flour2:3texture changedenser
Full guide →
maple syrup
honey0.75:1sweetness varies
Full guide →
maple syrup
coconut sugar0.5:1texture changedrier
Full guide →
Find more substitutions →

FAQ

Can I use regular wheat flour instead of arrowroot and coconut flour?

Yes, substitute 1 cup all-purpose flour for the arrowroot and coconut flour combined. Decrease coconut flour to 1/4 cup if keeping some for structure. Wheat flour will produce a denser, more traditional cupcake crumb.

What if my cupcakes come out dry?

Reduce baking time to 10 minutes and check with a toothpick. Arrowroot and coconut flour dry out quickly. Ensure eggs are fresh and shortening was cool enough not to overcook batter. Overbaking is the main culprit.

How long can I keep frosted cupcakes?

Frosted cupcakes last 1-2 days at room temperature in an airtight container or up to 5 days refrigerated. Unfrosted cupcakes freeze for 3 months; thaw before frosting.